Stephen F Altschul: search on Z-Library

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1

Basic local alignment search tool

Stephen F. Altschul, Warren Gish, Webb Miller, Eugene W. Myers, David J. Lipman

Journal:

Journal of Molecular Biology

Year:

1990

Language:

english

File:

PDF, 788 KB

english, 1990

2

A protein alignment scoring system sensitive at all evolutionary distances

Stephen F. Altschul

Journal:

Journal of Molecular Evolution

Year:

1993

Language:

english

File:

PDF, 1.14 MB

english, 1993

3

Optimal sequence alignment using affine gap costs

Stephen F. Altschul, Bruce W. Erickson

Journal:

Bulletin of Mathematical Biology

Year:

1986

Language:

english

File:

PDF, 878 KB

english, 1986

4

The anatomy of successful computational biology software

Altschul, Stephen, Demchak, Barry, Durbin, Richard, Gentleman, Robert, Krzywinski, Martin, Li, Heng, Nekrutenko, Anton, Robinson, James, Rasband, Wayne, Taylor, James, Trapnell, Cole

Journal:

Nature Biotechnology

Year:

2013

Language:

english

File:

PDF, 1.12 MB

english, 2013

5

Methods for Assessing the Statistical Significance of Molecular Sequence Features by Using General Scoring Schemes

Samuel Karlin and Stephen F. Altschul

Journal:

Proceedings of the National Academy of Sciences

Year:

1990

Language:

english

File:

PDF, 981 KB

english, 1990

6

Gap costs for multiple sequence alignment

Stephen F. Altschul

Journal:

Journal of Theoretical Biology

Year:

1989

Language:

english

File:

PDF, 645 KB

english, 1989

7

Protein database searches using compositionally adjusted substitution matrices

Stephen F. Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schäffer, Yi-Kuo Yu

Journal:

Year:

2005

Language:

english

File:

PDF, 154 KB

english, 2005

8

Trees, Stars, and Multiple Biological Sequence Alignment

Altschul, Stephen F., Lipman, David J.

Journal:

SIAM Journal on Applied Mathematics

Year:

1989

Language:

english

File:

PDF, 1.47 MB

english, 1989

9

Amino acid substitution matrices from an information theoretic perspective

Stephen F. Altschul

Journal:

Journal of Molecular Biology

Year:

1991

Language:

english

File:

PDF, 1.22 MB

english, 1991

10

Does the Current Reimbursement System Make Sense? A Real-World Analysis of Payment Per Unit Time in a Maryland Vascular Practice

John D. Martin, Patricia B. Warble, Jerry E. Mapes, Linda L. Weiss, Toni B. Schiller, Kimberly A. England, Louise A. Hanson, Jon A. Altschuler, Jon A. Hupp, Stephen F. Stanziale

Journal:

Journal of Vascular Surgery

Year:

2009

Language:

english

File:

PDF, 317 KB

english, 2009

11

eLS || Substitution Matrices

Altschul, Stephen F

Year:

2001

Language:

english

File:

PDF, 104 KB

english, 2001

12

[Methods in Enzymology] Computer Methods for Macromolecular Sequence Analysis Volume 266 || [27] Local alignment statistics

Altschul, Stephen F.

Year:

1996

Language:

english

File:

PDF, 1.04 MB

english, 1996

13

Weights for data related by a tree

Altschul, Stephen F., Carroll, Raymond J., Lipman, David J.

Journal:

Journal of Molecular Biology

Year:

1989

Language:

english

File:

PDF, 769 KB

english, 1989

14

Trees, Stars, and Multiple Biological Sequence Alignment

Stephen F. Altschul and David J. Lipman

Journal:

SIAM Journal on Applied Mathematics

Year:

1989

Language:

english

File:

PDF, 1.10 MB

english, 1989

15

Outlier detection in BLAST hits

Shah, Nidhi, Altschul, Stephen F., Pop, Mihai

Journal:

Algorithms for Molecular Biology

Year:

2018

Language:

english

File:

PDF, 1.78 MB

english, 2018

16

Presidential Forum

Hutner, Gordon, Fallon, Stephen M, Vigil, Ariana E, Roberts, Wendy Raphael, Bose, Purnima, Francisco, Timothy, Altschuler, Glenn C, Li, Stephanie, Fan, Christopher T

Journal:

American Literary History

Year:

2020

File:

PDF, 495 KB

2020

17

Generalized affine gap costs for protein sequence alignment

Stephen F. Altschul

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1998

Language:

english

File:

PDF, 125 KB

english, 1998

18

A nonlinear measure of subalignment similarity and its significance levels

Stephen F. Altschul, Bruce W. Erickson

Journal:

Bulletin of Mathematical Biology

Year:

1986

Language:

english

File:

PDF, 1.21 MB

english, 1986

19

Locally optimal subalignments using nonlinear similarity functions

Stephen F. Altschul, Bruce W. Erickson

Journal:

Bulletin of Mathematical Biology

Year:

1986

Language:

english

File:

PDF, 2.00 MB

english, 1986

20

Significance levels for biological sequence comparison using non-linear similarity functions

Stephen F. Altschul, Bruce W. Erickson

Journal:

Bulletin of Mathematical Biology

Year:

1988

Language:

english

File:

PDF, 1.20 MB

english, 1988

21

Composition-based statistics and translated nucleotide searches: Improving the TBLASTN module of BLAST

E Michael Gertz, Yi-Kuo Yu, Richa Agarwala, Alejandro A Schäffer, Stephen F Altschul

Journal:

Year:

2006

Language:

english

File:

PDF, 1.14 MB

english, 2006

22

Eukaryotic translation elongation factor 1γ contains a glutathione transferase domain—Study of a diverse, ancient protein super family using motif search and structural modeling

Eugene V. Koonin, Roman L. Tatusov, Stephen F. Altschul, Stephen H. Bryant, Arcady R. Mushegian, Peer Bork, Alfonso Valencia

Journal:

Protein Science

Year:

1994

Language:

english

File:

PDF, 4.41 MB

english, 1994

23

A workbench for multiple alignment construction and analysis

Dr. Gregory D. Schuler, Stephen F. Altschul, David J. Lipman

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1991

Language:

english

File:

PDF, 1.45 MB

english, 1991

24

Equal animals

ALTSCHUL, STEPHEN F., LIPMAN, DAVID J.

Journal:

Year:

1990

File:

PDF, 235 KB

1990

25

Issues in searching molecular sequence databases

Altschul, Stephen F., Boguski, Mark S., Gish, Warren, Wootton, John C.

Journal:

Nature Genetics

Year:

1994

File:

PDF, 1.76 MB

1994

26

…Functional motifs…

Koonin, Eugene V., Altschul, Stephen F., Bork, Peer

Journal:

Nature Genetics

Year:

1996

File:

PDF, 398 KB

1996

27

Significance levels for biological sequence comparison using non-linear similarity functions

Stephen F. Altschul, Bruce W. Erickson

Journal:

Bulletin of Mathematical Biology

Year:

1988

Language:

english

File:

PDF, 865 KB

english, 1988

28

Locally optimal subalignments using nonlinear similarity functions

Stephen F. Altschul, Bruce W. Erickson

Journal:

Bulletin of Mathematical Biology

Year:

1986

Language:

english

File:

PDF, 1.47 MB

english, 1986

29

Optimal sequence alignment using affine gap costs

Stephen F. Altschul, Bruce W. Erickson

Journal:

Bulletin of Mathematical Biology

Year:

1986

Language:

english

File:

PDF, 634 KB

english, 1986

30

A nonlinear measure of subalignment similarity and its significance levels

Stephen F. Altschul, Bruce W. Erickson

Journal:

Bulletin of Mathematical Biology

Year:

1986

Language:

english

File:

PDF, 899 KB

english, 1986

31

Expression of a recombinant IRP-like Plasmodium falciparum protein that specifically binds putative plasmodial IREs

Mark Loyevsky, Farah Mompoint, Emine Yikilmaz, Stephen F. Altschul, Thomas Madden, John C. Wootton, Joseph Kurantsin-Mills, Olakunle O. Kassim, Victor R. Gordeuk, Tracey A. Rouault

Journal:

Molecular and Biochemical Parasitology

Year:

2003

Language:

english

File:

PDF, 237 KB

english, 2003

32

Glossary

Fran Lewitter, Stephen F. Altschul, Steven E. Brenner, David Haussler, Sean R. Eddy, Kay Hofmann, James A. Lake, Jonathan E. Moore, Minoru Kanehisa, Michael J. Brownstein, Jeffrey M. Trent, Mark S. Bo

Journal:

Trends in Biotechnology

Year:

1998

Language:

english

File:

PDF, 48 KB

english, 1998

33

Fundamentals of database searching

Stephen F Altschul

Journal:

Trends in Biotechnology

Year:

1998

Language:

english

File:

PDF, 384 KB

english, 1998

34

Iterated profile searches with PSI-BLAST—a tool for discovery in protein databases

Stephen F. Altschul, Eugene V. Koonin

Journal:

Trends in Biochemical Sciences

Year:

1998

Language:

english

File:

PDF, 1.61 MB

english, 1998

35

Statistics of sequence-structure threading

Stephen H Bryant, Stephen F Altschul

Journal:

Current Opinion in Structural Biology

Year:

1995

Language:

english

File:

PDF, 867 KB

english, 1995

36

Leaf Pairs and Tree Dissections

Altschul, Stephen F.

Journal:

SIAM Journal on Discrete Mathematics

Year:

1989

Language:

english

File:

PDF, 758 KB

english, 1989

37

Influence of nicotinic acid on serum cholesterol in man

Rudolf Altschul, Abram Hoffer, J.D. Stephen

Journal:

Archives of Biochemistry and Biophysics

Year:

1955

Language:

english

File:

PDF, 128 KB

english, 1955

38

Domain enhanced lookup time accelerated BLAST

Grzegorz M Boratyn, Alejandro A Schäffer, Richa Agarwala, Stephen F Altschul, David J Lipman, Thomas L Madden

Journal:

Year:

2012

Language:

english

File:

PDF, 322 KB

english, 2012

39

A Tool for Multiple Sequence Alignment

David J. Lipman, Stephen F. Altschul and John D. Kececioglu

Journal:

Proceedings of the National Academy of Sciences

Year:

1989

Language:

english

File:

PDF, 660 KB

english, 1989

40

Differences in the RNA Binding Sites of Iron Regulatory Proteins and Potential Target Diversity

Julea Butt, Hae-Yeong Kim, James P. Basilion, Seth Cohen, Kazuhiro Iwai, Caroline C. Philpott, Stephen Altschul, Richard D. Klausner and Tracey A. Rouault

Journal:

Proceedings of the National Academy of Sciences

Year:

1996

Language:

english

File:

PDF, 949 KB

english, 1996

41

The Complexity of the Dirichlet Model for Multiple Alignment Data

Yu, Yi-Kuo, Altschul, Stephen F.

Journal:

Journal of Computational Biology

Year:

2011

Language:

english

File:

PDF, 383 KB

english, 2011

42

Compositional Adjustment of Dirichlet Mixture Priors

Ye, Xugang, Yu, Yi-Kuo, Altschul, Stephen F.

Journal:

Journal of Computational Biology

Year:

2010

Language:

english

File:

PDF, 1.95 MB

english, 2010

43

On the Inference of Dirichlet Mixture Priors for Protein Sequence Comparison

Ye, Xugang, Yu, Yi-Kuo, Altschul, Stephen F.

Journal:

Journal of Computational Biology

Year:

2011

Language:

english

File:

PDF, 470 KB

english, 2011

44

Dirichlet Mixtures, the Dirichlet Process, and the Structure of Protein Space

Nguyen, Viet-An, Boyd-Graber, Jordan, Altschul, Stephen F.

Journal:

Journal of Computational Biology

Year:

2013

Language:

english

File:

PDF, 778 KB

english, 2013

45

Erratum: The anatomy of successful computational biology software

Altschul, Stephen, Demchak, Barry, Durbin, Richard, Gentleman, Robert, Krzywinski, Martin, Li, Heng, Nekrutenko, Anton, Robinson, James, Rasband, Wayne, Taylor, James, Trapnell, Cole

Journal:

Nature Biotechnology

Year:

2014

Language:

english

File:

PDF, 153 KB

english, 2014

46

Optimized interstitial PDT prostate treatment planning with the Cimmino feasibility algorithm

Altschuler, Martin D., Zhu, Timothy C., Li, Jun, Hahn, Stephen M.

Journal:

Medical Physics

Year:

2005

Language:

english

File:

PDF, 1.06 MB

english, 2005

47

Coagulopathy Does Not Fully Protect Hospitalized Cirrhosis Patients from Peripheral Venous Thromboembolism.

Northup, Patrick G., McMahon, Matthew M., Ruhl, A. Parker, Altschuler, Scott E., Volk-Bednarz, Agata, Caldwell, Stephen H., Berg, Carl L.

Journal:

American Journal of Gastroenterology

Year:

2006

Language:

english

File:

PDF, 216 KB

english, 2006

48

Studying the Presidency

Altschuler, Bruce E., Edwards, George C., Wayne, Stephen J.

Journal:

American Political Science Review

Year:

1985

Language:

english

File:

PDF, 223 KB

english, 1985

49

SPIE Proceedings [SPIE SPIE BiOS: Biomedical Optics - San Jose, CA (Saturday 24 January 2009)] Optical Methods for Tumor Treatment and Detection: Mechanisms and Techniques in Photodynamic Therapy XVIII - A heterogeneous algorithm for PDT dose optimization for prostate

Altschuler, Martin D., Zhu, Timothy C., Hu, Yida, Finlay, Jarod C., Dimofte, Andreea, Wang, Ken, Li, Jun, Cengel, Keith, Malkowicz, S. B., Hahn, Stephen M., Kessel, David H.

Year:

2009

Language:

english

File:

PDF, 733 KB

english, 2009

50

Digital Philology: A Journal of Medieval Cultures

Nichols, Stephen G., Altschul, Nadia R.

Journal:

Digital Philology: A Journal of Medieval Cultures

Year:

2012

Language:

english

File:

PDF, 318 KB

english, 2012